Package: ezmtt 0.2.0

ezmtt: Easy MTT Assay Tidying and Plotting

This package automates the analysis and plotting of standard MTT workflows.

Authors:Kai Aragaki [aut, cre]

ezmtt_0.2.0.tar.gz
ezmtt_0.2.0.zip(r-4.7)ezmtt_0.2.0.zip(r-4.6)ezmtt_0.2.0.zip(r-4.5)
ezmtt_0.2.0.tgz(r-4.6-any)ezmtt_0.2.0.tgz(r-4.5-any)
ezmtt_0.2.0.tar.gz(r-4.7-any)ezmtt_0.2.0.tar.gz(r-4.6-any)
ezmtt_0.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
ezmtt/json (API)

# Install 'ezmtt' in R:

install.packages('ezmtt', repos = c('https://kaiaragaki.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kaiaragaki/ezmtt/issues

Pkgdown/docs site:https://kaiaragaki.github.io

Datasets:

mtt - Example data from an MTT

On CRAN:

2.70 score 3 scripts 7 exports 79 dependencies

Last updated from:b8bcd3eaa4. Checks:7 WARNING, 2 OK. Indexed: yes.

Target	Result	Time	Files	Syslog
linux-devel-x86_64	WARNING	145
source / vignettes	OK	227
linux-release-x86_64	WARNING	151
macos-release-arm64	WARNING	93
macos-oldrel-arm64	WARNING	123
windows-devel	WARNING	111
windows-release	WARNING	108
windows-oldrel	WARNING	94
wasm-release	OK	132

Exports:geom_mtt GeomMtt mtt_calc mtt_fit mtt_plot mtt_tidy stat_ic_mtt

Dependencies:abind backports boot broom car carData cli codetools colorspace cowplot cpp11 Deriv doBy dplyr drc farver forecast Formula fracdiff generics ggplot2 ggrepel glue gplate gtable gtools isoband labeling lattice lifecycle lme4 lmtest magrittr MASS Matrix MatrixModels mgcv microbenchmark minqa modelr multcomp mvtnorm nlme nloptr nnet numDeriv pbkrtest pillar pkgconfig plotrix purrr quantreg R6 rbibutils RColorBrewer Rcpp RcppArmadillo RcppEigen Rdpack reformulas rlang S7 sandwich scales SparseM stringi stringr survival TH.data tibble tidyr tidyselect timeDate urca utf8 vctrs viridisLite withr zoo

Tidying | A simple case | A more elaborate case | Calculating normalized optical densities | Fitting and plotting data

Rendered fromusing-ezmtt.Rmdusingknitr::rmarkdown

Last update: 2024-11-03
Started: 2024-11-02

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Plot MTT data	GeomMtt geom_mtt
Example data from an MTT	mtt
Calculate normalized ODs without fitting	mtt_calc
Fit an curve through MTT data	mtt_fit mtt_fit.data.frame mtt_fit.default mtt_fit.gp mtt_fit.spectramax
Plot MTT fits	mtt_plot
Tidy mtt data	mtt_tidy
Plot MTT data	stat_ic_mtt

Usage by other packages (reverse dependencies)