Package: gplate 0.2.0

gplate: A Grammar of Plates

`gplate` attempts to provide a succinct yet powerful grammar to describe common microwell layouts to aide in both plotting and tidying.

Authors:Kai Aragaki [aut, cre]

# Install 'gplate' in R:

install.packages('gplate', repos = c('https://kaiaragaki.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

example_plate - A 8x12 matrix of random integers 1-10
pcr_plate - Data from a PCR experiment on a 384-well plate
plate_formats - Standard plate formats for microwell plates
protein_quant - Data from a protein quantification assay in a 96-well plate. See the "Using gp to wrangle plate data" vignette for more details

On CRAN:

Last updated from:7d5c8935ee. Checks:7 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	WARNING	132
source / vignettes	OK	185
linux-release-x86_64	WARNING	175
macos-release-arm64	WARNING	116
macos-oldrel-arm64	WARNING	111
windows-devel	WARNING	76
windows-release	WARNING	107
windows-oldrel	WARNING	86
wasm-release	OK	109

Last update: 2023-02-16
Started: 2022-04-08

Last update: 2023-02-16
Started: 2022-01-15

Help page	Topics
Arrange 'gp' well data relative to user supplied 'start_corner'	arrange_by_dim
Coerce object to gp	as_gp as_gp.default as_gp.list
Create a dimension pattern 'unit' of a section	coordinate
A 8x12 matrix of random integers 1-10	example_plate
Take a set of numbers and flip them around on a number line	flip_dim
Make a gp object	gp
Slice out a smaller gp from a gp via coordinates	gp_excise
A theme for making little in-line plots	gp_mini_theme
Plot a 'gp' object	gp_plot gp_plot.data.frame gp_plot.gp
Add a section to a 'gp' object.	gp_sec gp_sec.gp
Extract useful, tidy data from a gp object	gp_serve
Turn data from 'plate form' to 'tidy form' and back	gp_reravel gp_unravel
Turn a tidy 'data.frame' into a 'gp'	gp_unserve
Check if axis moves in the canonical direction	is_fwd
A constructor for a gp object	new_gp
Recycle a df a non-integer number of times	non_int_replicate
Data from a PCR experiment on a 384-well plate	pcr_plate
Standard plate formats for microwell plates	plate_formats
Data from a protein quantification assay in a 96-well plate. See the "Using gp to wrangle plate data" vignette for more details	protein_quant
Performs 'flip_dim' if necessary	rel_dim
Repeat one dimension of a child section across a dimension of a parent section	unroll_sec_dim_along_parent
Extract well data from an object	well_data well_data.gp
Calculate wells of gp object	wells wells.gp