Package: tidyestimate 1.1.1.9000

tidyestimate: A Tidy Implementation of 'ESTIMATE'

The 'ESTIMATE' package infers tumor purity from expression data as a function of immune and stromal infiltrate, but requires writing of intermediate files, is un-pipeable, and performs poorly when presented with modern datasets with current gene symbols. 'tidyestimate' a fast, tidy, modern reimagination of 'ESTIMATE' (2013) <doi:10.1038/ncomms3612>.

Authors:Kai Aragaki [aut, cre], Paul Roebuck [cph], Kosuke Yoshihara [aut], Rahulsimham Vegesna [aut], Hoon Kim [aut], Roel Verhaak [aut]

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Bug tracker:https://github.com/kaiaragaki/tidyestimate/issues

On CRAN:

cancer-genomicstidy

3 exports 11 stars 1.53 score 33 dependencies 4 scripts 265 downloads

Last updated 1 years agofrom:7f98f860d3. Checks:OK: 1 NOTE: 6. Indexed: yes.

Exports:estimate_scorefilter_common_genesplot_purity

Dependencies:clicolorspacedplyrfansifarvergenericsggplot2ggrepelgluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcpprlangscalestibbletidyselectutf8vctrsviridisLitewithr