Package: reclanc 0.0.0.9000

reclanc: A Revival of the ClaNC Algorithm

Classification of microarrays to nearest centroids (ClaNC) <doi:10.1093/bioinformatics/bti756> selects optimal genes for centroids, similar to Prediction Analysis for Microarrays (PAM) but using fewer corrective factors, resulting in greater sensitivity and accuracy. Unfortunately, the original source of ClaNC can no longer be found. 'reclanc' reimplements this algorithm, with the the additional benefit of increased interoperability with standard data structures and modeling ecosystems.

Authors:Kai Aragaki [aut, cre], Alan Dabney [aut, cph]

reclanc_0.0.0.9000.tar.gz
reclanc_0.0.0.9000.zip(r-4.5)reclanc_0.0.0.9000.zip(r-4.4)reclanc_0.0.0.9000.zip(r-4.3)
reclanc_0.0.0.9000.tgz(r-4.4-any)reclanc_0.0.0.9000.tgz(r-4.3-any)
reclanc_0.0.0.9000.tar.gz(r-4.5-noble)reclanc_0.0.0.9000.tar.gz(r-4.4-noble)
reclanc_0.0.0.9000.tgz(r-4.4-emscripten)reclanc_0.0.0.9000.tgz(r-4.3-emscripten)
reclanc.pdf |reclanc.html
reclanc/json (API)

# Install 'reclanc' in R:
install.packages('reclanc', repos = c('https://kaiaragaki.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/kaiaragaki/reclanc/issues

Datasets:

On CRAN:

3.85 score 5 scripts 1 exports 43 dependencies

Last updated 4 months agofrom:4285683e6c. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 03 2024
R-4.5-winOKNov 03 2024
R-4.5-linuxOKNov 03 2024
R-4.4-winOKNov 03 2024
R-4.4-macOKNov 03 2024
R-4.3-winOKNov 03 2024
R-4.3-macOKNov 03 2024

Exports:clanc

Dependencies:clicodetoolscollapsecolorspacecpp11dplyrfansifarvergenericsggplot2globalsgluegtablehardhatisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmeparsnippillarpkgconfigprettyunitspurrrR6RColorBrewerRcpprlangscalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr

case-study

Rendered fromcase-study.Rmdusingknitr::rmarkdownon Nov 03 2024.

Last update: 2024-07-20
Started: 2024-07-16

using-reclanc

Rendered fromusing-reclanc.Rmdusingknitr::rmarkdownon Nov 03 2024.

Last update: 2024-07-14
Started: 2024-07-14

Readme and manuals

Help Manual

Help pageTopics
Calculate centroids from expression data with ClaNCclanc clanc.data.frame clanc.default clanc.ExpressionSet clanc.formula clanc.matrix clanc.recipe clanc.SummarizedExperiment
Predict from a 'clanc'predict.clanc
Synthetic Expression of Two Distinct Classessynthetic_expression