Package: reclanc 0.0.0.9000
reclanc: A Revival of the ClaNC Algorithm
Classification of microarrays to nearest centroids (ClaNC) <doi:10.1093/bioinformatics/bti756> selects optimal genes for centroids, similar to Prediction Analysis for Microarrays (PAM) but using fewer corrective factors, resulting in greater sensitivity and accuracy. Unfortunately, the original source of ClaNC can no longer be found. 'reclanc' reimplements this algorithm, with the the additional benefit of increased interoperability with standard data structures and modeling ecosystems.
Authors:
reclanc_0.0.0.9000.tar.gz
reclanc_0.0.0.9000.zip(r-4.7-any)reclanc_0.0.0.9000.zip(r-4.6-any)reclanc_0.0.0.9000.zip(r-4.5-any)
reclanc_0.0.0.9000.tgz(r-4.6-any)reclanc_0.0.0.9000.tgz(r-4.5-any)
reclanc_0.0.0.9000.tar.gz(r-4.7-any)reclanc_0.0.0.9000.tar.gz(r-4.6-any)
reclanc_0.0.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
reclanc/json (API)
| # Install 'reclanc' in R: |
| install.packages('reclanc', repos = c('https://kaiaragaki.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/kaiaragaki/reclanc/issues
Pkgdown/docs site:https://kaiaragaki.github.io
- synthetic_expression - Synthetic Expression of Two Distinct Classes
Last updated from:4285683e6c. Checks:7 WARNING, 1 ERROR, 1 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | WARNING | 254 | ||
| source / vignettes | ERROR | 420 | ||
| linux-release | WARNING | 225 | ||
| macos-release | WARNING | 173 | ||
| macos-oldrel | WARNING | 156 | ||
| windows-devel | WARNING | 209 | ||
| windows-release | WARNING | 178 | ||
| windows-oldrel | WARNING | 191 | ||
| wasm-release | OK | 164 |
Exports:clanc
Dependencies:clicodetoolscollapsecpp11dplyrfarvergenericsggplot2globalsgluegtablehardhatisobandlabelinglifecyclemagrittrparsnippillarpkgconfigprettyunitspurrrR6RColorBrewerRcpprlangS7scalessparsevctrsstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate centroids from expression data with ClaNC | clanc clanc.data.frame clanc.default clanc.ExpressionSet clanc.formula clanc.matrix clanc.recipe clanc.SummarizedExperiment |
| Predict from a 'clanc' | predict.clanc |
| Synthetic Expression of Two Distinct Classes | synthetic_expression |