Package: reclanc 0.0.0.9000

reclanc: A Revival of the ClaNC Algorithm

Classification of microarrays to nearest centroids (ClaNC) <doi:10.1093/bioinformatics/bti756> selects optimal genes for centroids, similar to Prediction Analysis for Microarrays (PAM) but using fewer corrective factors, resulting in greater sensitivity and accuracy. Unfortunately, the original source of ClaNC can no longer be found. 'reclanc' reimplements this algorithm, with the the additional benefit of increased interoperability with standard data structures and modeling ecosystems.

Authors:Kai Aragaki [aut, cre], Alan Dabney [aut, cph]

reclanc_0.0.0.9000.tar.gz
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reclanc_0.0.0.9000.tgz(r-4.5-any)reclanc_0.0.0.9000.tgz(r-4.4-any)reclanc_0.0.0.9000.tgz(r-4.3-any)
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reclanc_0.0.0.9000.tgz(r-4.4-emscripten)reclanc_0.0.0.9000.tgz(r-4.3-emscripten)
reclanc.pdf |reclanc.html✨
reclanc/json (API)

# Install 'reclanc' in R:
install.packages('reclanc', repos = c('https://kaiaragaki.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kaiaragaki/reclanc/issues

Pkgdown site:https://kaiaragaki.github.io

Datasets:

On CRAN:

Conda:

3.85 score 5 scripts 1 exports 44 dependencies

Last updated 8 months agofrom:4285683e6c. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKApr 02 2025
R-4.5-winOKApr 02 2025
R-4.5-macOKApr 02 2025
R-4.5-linuxOKApr 02 2025
R-4.4-winOKApr 02 2025
R-4.4-macOKApr 02 2025
R-4.4-linuxOKApr 02 2025
R-4.3-winOKApr 02 2025
R-4.3-macOKApr 02 2025

Exports:clanc

Dependencies:clicodetoolscollapsecolorspacecpp11dplyrfansifarvergenericsggplot2globalsgluegtablehardhatisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmeparsnippillarpkgconfigprettyunitspurrrR6RColorBrewerRcpprlangscalessparsevctrsstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr

case-study

Rendered fromcase-study.Rmdusingknitr::rmarkdownon Apr 02 2025.

Last update: 2024-07-20
Started: 2024-07-16

using-reclanc

Rendered fromusing-reclanc.Rmdusingknitr::rmarkdownon Apr 02 2025.

Last update: 2024-07-14
Started: 2024-07-14

Readme and manuals

Help Manual

Help pageTopics
Calculate centroids from expression data with ClaNCclanc clanc.data.frame clanc.default clanc.ExpressionSet clanc.formula clanc.matrix clanc.recipe clanc.SummarizedExperiment
Predict from a 'clanc'predict.clanc
Synthetic Expression of Two Distinct Classessynthetic_expression