Package: reclanc 0.0.0.9000

reclanc: A Revival of the ClaNC Algorithm

Classification of microarrays to nearest centroids (ClaNC) <doi:10.1093/bioinformatics/bti756> selects optimal genes for centroids, similar to Prediction Analysis for Microarrays (PAM) but using fewer corrective factors, resulting in greater sensitivity and accuracy. Unfortunately, the original source of ClaNC can no longer be found. 'reclanc' reimplements this algorithm, with the the additional benefit of increased interoperability with standard data structures and modeling ecosystems.

Authors:Kai Aragaki [aut, cre], Alan Dabney [aut, cph]

reclanc_0.0.0.9000.tar.gz
reclanc_0.0.0.9000.zip(r-4.7)reclanc_0.0.0.9000.zip(r-4.6)reclanc_0.0.0.9000.zip(r-4.5)
reclanc_0.0.0.9000.tgz(r-4.6-any)reclanc_0.0.0.9000.tgz(r-4.5-any)
reclanc_0.0.0.9000.tar.gz(r-4.7-any)reclanc_0.0.0.9000.tar.gz(r-4.6-any)
reclanc_0.0.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
reclanc/json (API)

# Install 'reclanc' in R:
install.packages('reclanc', repos = c('https://kaiaragaki.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kaiaragaki/reclanc/issues

Pkgdown/docs site:https://kaiaragaki.github.io

Datasets:

On CRAN:

Conda:

1.70 score 7 scripts 1 exports 37 dependencies

Last updated from:4285683e6c. Checks:7 WARNING, 1 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64WARNING251
source / vignettesERROR510
linux-release-x86_64WARNING235
macos-release-arm64WARNING186
macos-oldrel-arm64WARNING202
windows-develWARNING180
windows-releaseWARNING163
windows-oldrelWARNING221
wasm-releaseOK206

Exports:clanc

Dependencies:clicodetoolscollapsecpp11dplyrfarvergenericsggplot2globalsgluegtablehardhatisobandlabelinglifecyclemagrittrparsnippillarpkgconfigprettyunitspurrrR6RColorBrewerRcpprlangS7scalessparsevctrsstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr

Readme and manuals

Help Manual

Help pageTopics
Calculate centroids from expression data with ClaNCclanc clanc.data.frame clanc.default clanc.ExpressionSet clanc.formula clanc.matrix clanc.recipe clanc.SummarizedExperiment
Predict from a 'clanc'predict.clanc
Synthetic Expression of Two Distinct Classessynthetic_expression